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1

A highly annotated whole-genome sequence of a Korean individual

Kim, Jong-Il, Ju, Young Seok, Park, Hansoo, Kim, Sheehyun, Lee, Seonwook, Yi, Jae-Hyuk, Mudge, Joann, Miller, Neil A., Hong, Dongwan, Bell, Callum J., Kim, Hye-Sun, Chung, In-Soon, Lee, Woo-Chung, Lee

Journal:

Year:

2009

Language:

english

File:

PDF, 1.09 MB

english, 2009

2

Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens

Deschamps, Stéphane, Mudge, Joann, Cameron, Connor, Ramaraj, Thiruvarangan, Anand, Ajith, Fengler, Kevin, Hayes, Kevin, Llaca, Victor, Jones, Todd J., May, Gregory

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 815 KB

english, 2016

3

[ACM Press the 10th ACM International Conference - Niagara Falls, NY, USA (2019.09.07-2019.09.10)] Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '19 - Pangenome-Wide Association Studies with Frequented Regions

Manuweera, Buwani, Mudge, Joann, Kahanda, Indika, Mumey, Brendan, Ramaraj, Thiruvarangan, Cleary, Alan

Year:

2019

Language:

english

File:

PDF, 7.32 MB

english, 2019

4

[ACM Press the 10th ACM International Conference - Niagara Falls, NY, USA (2019.09.07-2019.09.10)] Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '19 - Pangenome-Wide Association Studies with Frequented Regions

Manuweera, Buwani, Mudge, Joann, Kahanda, Indika, Mumey, Brendan, Ramaraj, Thiruvarangan, Cleary, Alan

Year:

2019

File:

PDF, 7.32 MB

2019

5

Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis

Baranzini, Sergio E., Mudge, Joann, van Velkinburgh, Jennifer C., Khankhanian, Pouya, Khrebtukova, Irina, Miller, Neil A., Zhang, Lu, Farmer, Andrew D., Bell, Callum J., Kim, Ryan W.

Journal:

Year:

2010

Language:

english

File:

PDF, 697 KB

english, 2010

6

Genome-wide association studies: progress and potential for drug discovery and development

Kingsmore, Stephen F., Lindquist, Ingrid E., Mudge, Joann, Gessler, Damian D., Beavis, William D.

Journal:

Nature Reviews Drug Discovery

Year:

2008

Language:

english

File:

PDF, 925 KB

english, 2008

7

Legume genomes: more than peas in a pod

Nevin Dale Young, Joann Mudge, TH Noel Ellis

Journal:

Current Opinion in Plant Biology

Year:

2003

Language:

english

File:

PDF, 115 KB

english, 2003

8

A Randomized Controlled Trial of Fludrocortisone for the Treatment of Hyperkalemia in Hemodialysis Patients

Mohammed O. Kaisar, Kathryn J. Wiggins, Joanne M. Sturtevant, Carmel M. Hawley, Scott B. Campbell, Nicole M. Isbel, David W. Mudge, Andrew Bofinger, James J.B. Petrie, David W. Johnson

Journal:

American Journal of Kidney Diseases

Year:

2006

Language:

english

File:

PDF, 119 KB

english, 2006

9

A COMPARISON OF THE EFFECTS OF DANAZOL AND GESTRINONE ON TESTOSTERONE BINDING TO SEX HORMONE BINDING GLOBULIN IN VITRO AND IN VIVO

M. DOWSETT, K. L. FORBES, GILLIAN L. ROSE, JOANNE E. MUDGE, S. L. JEFFCOATE

Journal:

Clinical Endocrinology

Year:

1986

Language:

english

File:

PDF, 501 KB

english, 1986

10

DOSAGE-RELATED EFFECTS OF DANAZOL ON SEX HORMONE BINDING GLOBULIN AND FREE AND TOTAL ANDROGEN LEVELS

K. L. FORBES, M. DOWSETT, GILLIAN L. ROSE, JOANNE E. MUDGE, S. L. JEFFCOATE

Journal:

Clinical Endocrinology

Year:

1986

Language:

english

File:

PDF, 597 KB

english, 1986

11

Meiosis-specific gene discovery in plants: RNA-Seq applied to isolatedArabidopsismale meiocytes

Changbin Chen, Andrew D Farmer, Raymond J Langley, Joann Mudge, John A Crow, Gregory D May, James Huntley, Alan G Smith, Ernest F Retzel

Journal:

BMC Plant Biology

Year:

2010

Language:

english

File:

PDF, 3.17 MB

english, 2010

12

Highly syntenic regions in the genomes of soybean,Medicago truncatula, andArabidopsis thaliana

Joann Mudge, Steven B Cannon, Peter Kalo, Giles ED Oldroyd, Bruce A Roe, Christopher D Town, Nevin D Young

Journal:

BMC Plant Biology

Year:

2005

Language:

english

File:

PDF, 725 KB

english, 2005

13

Genome-wide association genetics of an adaptive trait in lodgepole pine

THOMAS L. PARCHMAN, ZACHARIAH GOMPERT, JOANN MUDGE, FAYE D. SCHILKEY, CRAIG W. BENKMAN, C. ALEX BUERKLE

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 319 KB

english, 2012

14

Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici

Lamour, Kurt H., Mudge, Joann, Gobena, Daniel, Hurtado-Gonzales, Oscar P., Schmutz, Jeremy, Kuo, Alan, Miller, Neil A., Rice, Brandon J., Raffaele, Sylvain, Cano, Liliana M., Bharti, Arvind K., Donaho

Journal:

Molecular Plant-Microbe Interactions

Year:

2012

Language:

english

File:

PDF, 950 KB

english, 2012

15

Intensity and focus of heart failure disease management after hospital discharge

Monica R. Shah, Carol M. Flavell, Joanne R. Weintraub, Michelle A. Young, Vic Hasselblad, James C. Fang, Anju Nohria, Eldrin F. Lewis, Michael M. Givertz, Gilbert Mudge Jr, Lynne W. Stevenson

Journal:

American Heart Journal

Year:

2005

Language:

english

File:

PDF, 115 KB

english, 2005

16

Pilot Study of a Hospital-to-Home Program To Reduce Heart Failure Readmissions Led by Heart Failure Nurse Practitioners

Aileen Sauris, Carol Flavell, Joanne Weintraub, Michelle Young, Parakash Pratibhu, Michael Givertz, Neal Lakdawala, Eldrin Lewis, Gilbert Mudge, Anju Nohria, Lynne Stevenson, Akshay Desai

Journal:

Journal of Cardiac Failure

Year:

2011

Language:

english

File:

PDF, 57 KB

english, 2011

17

Heart failure and diabetes: collateral benefit of chronic disease management?

Molly G. Ware, Lynne W. Stevenson, Michael M. Givertz, Carol M. Flavell, John A. Jarcho, Joanne Weintraub, Eldrin F. Lewis, Nohria Anju, James C. Fang, Gilbert H. Mudge, Michelle A. Young, Norma Osbor

Journal:

Journal of Cardiac Failure

Year:

2003

Language:

english

File:

PDF, 46 KB

english, 2003

18

Characterization of a set of novel meiotically-active promoters inArabidopsis

Li, Junhua, Farmer, Andrew D, Lindquist, Ingrid E, Dukowic-Schulze, Stefanie, Mudge, Joann, Li, Tao, Retzel, Ernest F, Chen, Changbin

Journal:

BMC Plant Biology

Year:

2012

Language:

english

File:

PDF, 924 KB

english, 2012

19

Soybean genomic survey: BAC-end sequences near RFLP and SSR markers

Marek, Laura Fredrick, Mudge, Joann, Darnielle, Laura, Grant, David, Hanson, Nadja, Paz, Margie, Huihuang, Yan, Denny, Roxanne, Larson, Karin, Foster-Hartnett, Dawn, Cooper, Anne, Danesh, Dariush, Lar

Journal:

Year:

2001

File:

PDF, 165 KB

2001

20

A transcriptomic approach to elucidate the physiological significance of human cytochrome P450 2S1 in bronchial epithelial cells

Madanayake, Thushara W, Lindquist, Ingrid E, Devitt, Nicholas P, Mudge, Joann, Rowland, Aaron M

Journal:

Year:

2013

Language:

english

File:

PDF, 827 KB

english, 2013

21

Comparative Transcriptomics of Early Meiosis in Arabidopsis and Maize

Dukowic-Schulze, Stefanie, Harris, Anthony, Li, Junhua, Sundararajan, Anitha, Mudge, Joann, Retzel, Ernest F., Pawlowski, Wojciech P., Chen, Changbin

Journal:

Journal of Genetics and Genomics

Year:

2014

Language:

english

File:

PDF, 3.76 MB

english, 2014

22

The transcriptome landscape of early maize meiosis

Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Mudge, Joann, Ramaraj, Thiruvarangan, Farmer, Andrew D, Wang, Minghui, Sun, Qi, Pillardy, Jaroslaw, Kianian, Shahryar, Retzel, Ernest F, Pawlowski, Woj

Journal:

BMC Plant Biology

Year:

2014

Language:

english

File:

PDF, 894 KB

english, 2014

23

Comparative genomic analysis of sequences sampled from a small region on soybean ( Glycine max ) molecular linkage group G

Foster-Hartnett, Dawn, Mudge, Joann, Larsen, Dana, Danesh, Dariush, Yan, Huihuang, Denny, Roxanne, Peñuela, Silvia, Young, Nevin D

Journal:

Year:

2002

File:

PDF, 681 KB

2002

24

High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches

Bonhomme, Maxime, André, Olivier, Badis, Yacine, Ronfort, Joëlle, Burgarella, Concetta, Chantret, Nathalie, Prosperi, Jean-Marie, Briskine, Roman, Mudge, Joann, Debéllé, Frédéric, Navier, Hélène, Mite

Journal:

New Phytologist

Year:

2014

Language:

english

File:

PDF, 2.05 MB

english, 2014

25

Soybean bacterial artificial chromosome contigs anchored with RFLPs: insights into genome duplication and gene clustering

Mudge, Joann, Huihuang, Yan, Denny, Roxanne L, Howe, Dana K, Danesh, Dariush, Marek, Laura F, Retzel, Ernie, Shoemaker, Randy C, Young, Nevin D

Journal:

Year:

2004

File:

PDF, 257 KB

2004

26

Liver lobe torsion in six horses

Tennent-Brown, Brett S., Mudge, Margaret C., Hardy, Joanne, Whelchel, Dorothy D., Freeman, David E., Fischer, A. T.

Journal:

Journal of the American Veterinary Medical Association

Year:

2012

Language:

english

File:

PDF, 320 KB

english, 2012

27

Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut,Arachis hypogaeaL.

Chopra, Ratan, Burow, Gloria, Farmer, Andrew, Mudge, Joann, Simpson, Charles E., Wilkins, Thea A., Baring, Michael R., Puppala, Naveen, Chamberlin, Kelly D., Burow, Mark D.

Journal:

Molecular Genetics and Genomics

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

28

Sequencing-based large-scale genomics approaches with small numbers of isolated maize meiocytes

Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Ramaraj, Thiruvarangan, Mudge, Joann, Chen, Changbin

Journal:

Frontiers in Plant Science

Year:

2014

Language:

english

File:

PDF, 2.31 MB

english, 2014

29

Origin of the Flax Cultivar ‘Appar’ and Its Position within the Linum perenne Complex

Pendleton, Rosemary L., Kitchen, Stanley G., Mudge, Joann, McArthur, E. Durant

Journal:

International Journal of Plant Sciences

Year:

2008

Language:

english

File:

PDF, 302 KB

english, 2008

30

C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference Response

Brackney, Doug E., Scott, Jaclyn C., Sagawa, Fumihiko, Woodward, Jimmy E., Miller, Neil A., Schilkey, Faye D., Mudge, Joann, Wilusz, Jeffrey, Olson, Ken E., Blair, Carol D., Ebel, Gregory D., O'Neill,

Journal:

PLoS Neglected Tropical Diseases

Year:

2010

Language:

english

File:

PDF, 431 KB

english, 2010

31

Databases and Information Integration for the Medicago truncatula Genome and Transcriptome

Steven B. Cannon, John A. Crow, Michael L. Heuer, Xiaohong Wang, Ethalinda K. S. Cannon, Christopher Dwan, Anne-Francoise Lamblin, Jayprakash Vasdewani, Joann Mudge, Andrew Cook, John Gish, Foo Cheung

Journal:

PLANT PHYSIOLOGY

Year:

2005

Language:

english

File:

PDF, 1.88 MB

english, 2005

32

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

Antoine Branca, Timothy D. Paape, Peng Zhou, Roman Briskine, Andrew D. Farmer, Joann Mudge, Arvind K. Bharti, Jimmy E. Woodward, Gregory D. May, Laurent Gentzbittel, Cécile Ben, Roxanne Denny, Michael

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 514 KB

english, 2011

33

The inhibitory effects of danazol, danazol metabolites, gestrinone, and testosterone on the growth of human endometrial cells in vitro

Rose, Gillian L., Dowsett, Mitchell, Mudge, Joanne E., White, John O., Jeffcoate, Stephen L.

Journal:

Fertility and Sterility

Year:

1988

Language:

english

File:

PDF, 613 KB

english, 1988

34

The plant-specific protein FEHLSTART controls male meiotic entry, initializing meiotic synchronization in Arabidopsis

Li, Junhua, Dukowic-Schulze, Stefanie, Lindquist, Ingrid E., Farmer, Andrew D., Kelly, Bridget, Li, Tao, Smith, Alan G., Retzel, Ernest F., Mudge, Joann, Chen, Changbin

Journal:

The Plant Journal

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

35

RANDOMLY AMPLIFIED POLYMORPHIC DNA ANALYSIS (RAPD) OF ARTEMISIA SUBGENUS TRIDENTATAE SPECIES AND HYBRIDS

E. Durant McArthur, Joann Mudge, Renée Van Buren, W. Ralph Andersen, Stewart C. Sanderson and David G. Babbel

Journal:

The Great Basin Naturalist

Year:

1998

Language:

english

File:

PDF, 2.70 MB

english, 1998

36

Augmenting Chinese hamster genome assembly by identifying regions of high confidence

Vishwanathan, Nandita, Bandyopadhyay, Arpan A., Fu, Hsu-Yuan, Sharma, Mohit, Johnson, Kathryn C., Mudge, Joann, Ramaraj, Thiruvarangan, Onsongo, Getiria, Silverstein, Kevin A. T., Jacob, Nitya M., Le,

Journal:

Biotechnology Journal

Year:

2016

Language:

english

File:

PDF, 1.55 MB

english, 2016

37

Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes

Suh, Alexander, Witt, Christopher C., Menger, Juliana, Sadanandan, Keren R., Podsiadlowski, Lars, Gerth, Michael, Weigert, Anne, McGuire, Jimmy A., Mudge, Joann, Edwards, Scott V., Rheindt, Frank E.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 733 KB

english, 2016

38

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Exploring Frequented Regions in Pan-Genomic Graphs

Cleary, Alan, Kahanda, Indika, Mumey, Brendan, Mudge, Joann, Ramaraj, Thiruvarangan

Year:

2017

Language:

english

File:

PDF, 1.82 MB

english, 2017

39

Correction to: The transcriptome landscape of early maize meiosis

Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Mudge, Joann, Ramaraj, Thiruvarangan, Farmer, Andrew D., Wang, Minghui, Sun, Qi, Pillardy, Jaroslaw, Kianian, Shahryar, Retzel, Ernest F., Pawlowski, W

Journal:

BMC Plant Biology

Year:

2018

Language:

english

File:

PDF, 443 KB

english, 2018

40

Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing

Grover, Corrinne E, Arick, Mark A, Conover, Justin L, Thrash, Adam, Hu, Guanjing, Sanders, William S, Hsu, Chuan-Yu, Naqvi, Rubab Zahra, Farooq, Muhammad, Li, Xiaochong, Gong, Lei, Mudge, Joann, Ramar

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

41

Candidate Genes and Genetic Architecture of Symbiotic and Agronomic Traits Revealed by Whole-Genome, Sequence-Based Association Genetics in Medicago truncatula

Stanton-Geddes, John, Paape, Timothy, Epstein, Brendan, Briskine, Roman, Yoder, Jeremy, Mudge, Joann, Bharti, Arvind K., Farmer, Andrew D., Zhou, Peng, Denny, Roxanne, May, Gregory D., Erlandson, Step

Journal:

Year:

2013

Language:

english

File:

PDF, 338 KB

english, 2013

42

Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum

Mudge, Joann, Miller, Neil A., Khrebtukova, Irina, Lindquist, Ingrid E., May, Gregory D., Huntley, Jim J., Luo, Shujun, Zhang, Lu, van Velkinburgh, Jennifer C., Farmer, Andrew D., Lewis, Sharon, Beavi

Journal:

Year:

2008

Language:

english

File:

PDF, 1.92 MB

english, 2008

43

Analysis of the Transcriptomes Downstream of Eyeless and the Hedgehog, Decapentaplegic and Notch Signaling Pathways in Drosophila melanogaster

Nfonsam, Landry E., Cano, Carlos, Mudge, Joann, Schilkey, Faye D., Curtiss, Jennifer, Reh, Thomas A.

Journal:

Year:

2012

Language:

english

File:

PDF, 3.73 MB

english, 2012

44

High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize

Kianian, Penny M. A., Wang, Minghui, Simons, Kristin, Ghavami, Farhad, He, Yan, Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Sun, Qi, Pillardy, Jaroslaw, Mudge, Joann, Chen, Changbin, Kianian, Sha

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 875 KB

english, 2018

45

Histone citrullination represses miRNA expression resulting in increased oncogene mRNAs in somatolactotrope cells

DeVore, Stanley B., Young, Coleman H., Li, Guangyuan, Sundararajan, Anitha, Ramaraj, Thiruvarangan, Mudge, Joann, Schilkey, Faye, Muth, Aaron, Thompson, Paul R., Cherrington, Brian D.

Journal:

Molecular and Cellular Biology

Year:

2018

Language:

english

File:

PDF, 2.85 MB

english, 2018

46

Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis

Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Ramaraj, Thiruvarangan, Kianian, Shahryar, Pawlowski, Wojciech P., Mudge, Joann, Chen, Changbin

Journal:

Frontiers in Plant Science

Year:

2016

Language:

english

File:

PDF, 2.42 MB

english, 2016

47

Exploring Frequented Regions in Pan-Genomic Graphs

Cleary, Alan, Ramaraj, Thiruvarangan, Kahanda, Indika, Mudge, Joann, Mumey, Brendan

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.97 MB

english, 2018

48

Hybrid assembly with long and short reads improves discovery of gene family expansions

Miller, Jason R., Zhou, Peng, Mudge, Joann, Gurtowski, James, Lee, Hayan, Ramaraj, Thiruvarangan, Walenz, Brian P., Liu, Junqi, Stupar, Robert M., Denny, Roxanne, Song, Li, Singh, Namrata, Maron, Lyza

Journal:

Year:

2017

Language:

english

File:

PDF, 545 KB

english, 2017

49

Experimental drought reduces genetic diversity in the grassland foundation species Bouteloua eriopoda

Whitney, Kenneth D., Mudge, Joann, Natvig, Donald O., Sundararajan, Anitha, Pockman, William T., Bell, Jennifer, Collins, Scott L., Rudgers, Jennifer A.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.24 MB

english, 2019

50

Corrigendum: Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis

Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Ramaraj, Thiruvarangan, Kianian, Shahryar, Pawlowski, Wojciech P., Mudge, Joann, Chen, Changbin

Journal:

Frontiers in Plant Science

Year:

2020

File:

PDF, 429 KB

2020

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